Advanced Microbiome Manipulation (Cohort B) - 2025 Term

The gastrointestinal microbiome is often called the new frontier of medicine. A growing body of research is suggesting that there are few disease conditions that are not influenced by the composition of this ecosystem! Thus, it is vital for clinicians to be well-versed and knowledgeable in this area in order to provide optimal care to their patients. This course will give practitioners a thorough foundation and in-depth knowledge of the gastrointestinal microbiota and how to modify its composition to treat a wide range of health conditions. On completion of this ten-week course, practitioners will become Certified Microbiome Analysts, which will help potential patients identify you as a clinician who has done extensive post-graduate training in this new and exciting area and as being assured in the fields of microbiome assessment, interpretation, and modification.

  Enroll in Course

The gastrointestinal microbiome is often called the new frontier of medicine . A growing body of research is showing that there are few human disease conditions that are not influenced by the composition of this ecosystem! Thus, it is vital for clinicians to be well-versed and up-skilled in this area in order to provide optimal care to their patients.

This course will give practitioners a thorough foundation and in-depth knowledge of the gastrointestinal microbiota and how to modify its composition to treat a wide range of health conditions. On completion of this ten-week course, practitioners will become Certified Microbiome Analysts, which will help potential patients identify you as a clinician who has done extensive post-graduate training in this new and exciting area and as being assured in the fields of microbiome assessment, interpretation, and modification.

Become a Certified Microbiome Analyst

Dr Hawrelak has a unique skill set - being a clinician, research scientist, and educator - who completed his PhD in the area of the gut microbiota and who has been researching and practicing in this area for over 25 years. He has been described as an inspiring teacher and mentor with an unrivalled depth of knowledge in this field. He has written 20 textbook chapters covering topics like Probiotics, Prebiotics, and the Gastrointestinal Microbiome and has been involved in microbiota research for 25 years.

The Advanced Microbiome Manipulation course is the most comprehensive course of its kind - taught by a worldwide leader in the field. This course provides you with weekly pre-recorded lecture content (covering over 25 different topic areas) that you can watch at your own pace each week and dedicated weekly live Q and A sessions over Zoom to go deeper into the weekly topics, get your questions answered, learn from the questions others in the course ask, and discuss cases. This is a rare opportunity to learn directly from Dr Hawrelak, who will be leading the weekly live classes.

The microbiome is often referred to as a “new” field of medicine and was generally not covered in any degree of depth in previous (and even current!) clinician training. Due to the boom in microbiome research over the past 20 years, it is also a field that is very challenging to navigate successfully without additional post-graduate study - especially in light of the proliferation of microbiome testing options that clinicians can now choose from. These are the reasons Dr Hawrelak set up this course – to elevate clinician knowledge and deepen skills in this fast-moving area. Learn from someone who has spent over 25 years researching this area and working with patients on optimising their microbiomes.

One of the other key reasons for creating this course was to create a microbiome-centered Find a Practitioner page, so patients can be confident they are working with clinicians who have extensive knowledge of the GI microbiome, use the most up-to-date and accurate assessment techniques, have thorough knowledge of the tools to optimise this vital ecosystem, and deeply understand the critical importance of the microbiome in human health .

This is vital, as Dr Hawrelak has observed the damage that can be done to the microbiome by clinicians inadequately trained in this area. Upon completion of the course, you will be listed as a Certified Microbiome Analyst on the Microbiome Restoration Centers’ Practitioner search page.

Please note that enrolments in this course are limited to those who

have successfully completed one of the following prerequisite courses:

- Naturopathic and Functional Medicine Approaches to Gastrointestinal Disorders

- UWS Bridging Course - Naturopathic & Functional Medicine Approaches to Gastrointestinal Disorders

- Bridging Course to the Advanced Microbiome Manipulation & Early Life Courses


What You'll Cover in this Course...

Week 1: Meet the Key Microbiome Players - The Good...

Module 1 - Bifidobacterium

Module 2 - Lactobacillus

Module 3 - Akkermansia

Module 4 - Faecalibacterium

Module 5 - Key Butyrate Producers

Module 6 - Diversifying the Microbiome


Week 2: The Bad and the Ugly

Module 7 - Escherichia

Module 8 - Streptococcus

Module 9 - Bacteroides

Module 10 - Alistipes

Module 11 - Prevotella

Module 12 - The Classic Hydrogen Sulphide Producers - Bilophila and Desulfovibrio

Module 13 - Fusobacterium

Module 14 - The Methane Producers


Week 3 - In Depth Reviews of Different Microbiome Tests

Module 15 - Microbiota Assessment Options and Functional Marker Interpretation

Module 15a - The GI-Map Test

Module 15b - The Ombre Test

Module 15c - The Biomesight Test

Module 15d - The Microba Insight Test and Synlab MyBiome

Module 15e - The Biohm Test

Module 15f - The BiomeFx Test

Module 15g - The CoBiome Suite of Tests (Microba)

Module 15h - The Microbiome Prescription Website

Module 15i - Tiny Health and Tiny Health Pro

Module 15j - Vitract

Module 16 - Medicines and the Microbiome


Week 4

Module 17 - Enhancing Microbiota Polyphenol Transformations

Module 18 - Endotoxemia - Addressing a Key Driver of Chronic Disease


Week 5

Module 19 - The Mitochondrial-Microbiota Axis - Enhancing Mitochondrial Function


Week 6

Module 20 - The Role of the Microbiota in Cognitive Decline and Alzheimer's Disease

Module 21 - Fecal Microbial Transplants - The Transformative Power of Poo


Week 7

Module 22 - The Microbiota and Mood Disorders - Depression & Anxiety

Module 23 - Metabolic Disease and the Microbiome


Week 8

Module 24 - How to Harness the Microbiome for Enhancing Longevity and Healthy Aging

Module 25 - The Role of Dysbiosis in Autistic Spectrum Disorders


Week 9

Module 26 - Optimising the Microbiota to Enhance Cancer Outcomes

Module 27 - Common Microbiota Patterns and How to Address Them - Proteobacteria, Bacteroides and Prevotella Overgrowths


Week 10

Case Study Discussion

Your Instructor


Dr Jason Hawrelak
Dr Jason Hawrelak

Dr Hawrelak is a microbiota and probiotic researcher, educator, and clinician with over 20 years experience treating mainly gastrointestinal conditions and more than 20 years teaching students and practitioners how to diagnose and treat gastrointestinal conditions, as well as how to promote optimal gut health. Click here for a full bio.


Frequently Asked Questions


When does the course start?
The official first day of term is Monday, October 6th 2025. Weeks' 1 content will go live from 6 am (AET)
How long do I have access to the course?
You get 12 months of access to the lectures. But lifelong access to the comprehensive lecture notes from the course.
When are the live classes scheduled?
The live classes are run over Zoom and occur weekly for 60-90 mins over the course of the 10-week term. Although it is worth noting that historically some sessions have run for longer than 90 mins. Live classes will run at 11:30 am on Tuesdays (Australian Eastern Time). The first live session will be Tuesday, October 14th, to give you a week to review the content before the session. All live sessions will be recorded so that students who could not be present live will still be able to watch them. There is a google doc circulated to all students before the live sessions, so that all students will be able to answer questions and have them addressed in the class - even if you can't be there live.
How often does this course run?
The course runs once per year only. And there are only a limited number of student places available.
How much-pre-recorded lecture content is there each week?
Each week will differ. Plus the content is frequently updated. So I cannot be definitive here currently. It will vary from 1-5 hours each week - averaging 1.5-2 hours per week over the term.
I'm keen - sign me up! How do I enroll in the course?
This course is only available for clinicians who have completed one of our prerequisite courses: - Naturopathic & Functional Medicine Approaches to Gastrointestinal Disorders - Bridging Course to the Advanced Microbiome Manipulation & Early Life Courses - UWS Bridging Course - Naturopathic & Functional Medicine Approaches to Gastrointestinal Disorders You cannot enroll or complete this course unless you have completed one of the courses listed above.
Have more questions about the course?
If you have more questions about the Advanced Microbiome Manipulation course, reach out to Helene ([email protected]) and she'll be able to help.

Get started now!